ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR833
source: miRBase, original name: ath-MIR833 (MI0005389)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGACCGATGTCAACAAACAAG miRNA* TGTTTGTTGTACTCGGTCTAGT mismatches: 0 bulges: 2 |
pre-miRNA
GGACGTAGATGGTACTCTTACAGATGGTGATCGTGAAAACAAACGGAGGAGTTTGTTTGTTGTACTCGGTCTAGTTCAAACCAAAACATCTTTGCAAATA
TGTATGGTTTGAGCTAGACCGATGTCAACAAACAAGCTGCTTCGTTTGTATTCACCATCAACATCTTTAAGAAACGCTGCACCACTC
dot-bracket secondary structure
((..((((.((....(((((.(((((.((((.(((((.((((((((((.(((((((((((((.((((((((((((((((((((..((((.((....)).)
))).)))))))))))))))))).))))))))))))))).)))))))))).))))).)))).))))).)))))..)))))).))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
GGACGTAGATGGTACTCTTACAGATGGTGATCGTGAAAACAAACGGAGGAGTTTGTTTGTTGTACTCGGTCTAGTTCAAACCAAAACATCTTTGCAAATA
TGTATGGTTTGAGCTAGACCGATGTCAACAAACAAGCTGCTTCGTTTGTATTCACCATCAACATCTTTAAGAAACGCTGCACCACTC
dot-bracket secondary structure
((..((((.((....(((((.(((((.((((.(((((.((((((((((.(((((((((((((.((((((((((((((((((((..((((.((....)).)
))).)))))))))))))))))).))))))))))))))).)))))))))).))))).)))).))))).)))))..)))))).))....
SIMILARITIES| miRBase ath-MIR833: 1e-103 PMRD ath-miRf10990-akr: 3e-70 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10990-akr from PMRD (MNEST048090) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
