miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000287
species: Brassica napus
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTG

miRNA*
 GATCATCCTGCGGCTTCATT

mismatches: 1
bulges: 1
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pre-miRNA
 TCTATGTTGGTTTTGGGAGGCTGAAGCTGCCAGCATGATCTGATAGTGGTACCAGATCATCCTGCGGCTTCATTCACTCAAATTACCAACAA

dot-bracket secondary structure
....(((((((((((((.((.(((((((((.((.((((((((.((....)).)))))))).))))))))))).)).))))))..))))))).


SIMILARITIES
miRBase aly-MIR167d: 0.0000000003

PMRD ssp-miR167: 0.00000007

microPC miR167: 8e-23		UniProt no hits

RFAM MIR167_1: 0.000001		most similar mature miRNAs

Identical with: miR167 from microPC (MNEST046083)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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