ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR167
source: miRBase, original name: bna-MIR167c (MI0006473)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGTTCGTAGTTTCACC mismatches: 1 bulges: 0 |
pre-miRNA
GGTGCACCGGCATCTGATGAAGCTGCCAGCATGATCTAGTTAACTTTATTTCTCCGTTGTTTATCCATGACAATGGAAAAGGGATAAGTGTCGATTAGAT
CATGTTCGTAGTTTCACCCGTTGACTGTCGCATC
dot-bracket secondary structure
(((((..(((((.(.(.(((((((((.(((((((((((((..(((((((..((((((((((.......)))))))))...)..))))).))..)))))))
)))))).))))))))).).).)).)))..)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
GGTGCACCGGCATCTGATGAAGCTGCCAGCATGATCTAGTTAACTTTATTTCTCCGTTGTTTATCCATGACAATGGAAAAGGGATAAGTGTCGATTAGAT
CATGTTCGTAGTTTCACCCGTTGACTGTCGCATC
dot-bracket secondary structure
(((((..(((((.(.(.(((((((((.(((((((((((((..(((((((..((((((((((.......)))))))))...)..))))).))..)))))))
)))))).))))))))).).).)).)))..)))))
SIMILARITIES| miRBase bra-MIR167a: 4e-72 PMRD bra-miR167a: 4e-72 microPC miR167: 3e-51 | UniProt no hits RFAM MIR167_1: 6e-65 |
Identical with: miR167 from microPC (MNEST045889) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
