ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR169
source: miRBase, original name: bna-MIR169a (MI0006457)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGA miRNA* GGCAAGTTGTCCTTGGCTATA mismatches: 3 bulges: 0 |
pre-miRNA
TGTGACCAAAGTAGTGTGCAGCCAAGGATGACTTGCCGATTTAAAATATCTGATAAGTATTTTATTTCGTATTTTAAAGAAAAAAATCATGATCGGCAAG
TTGTCCTTGGCTATACGTTTCTTTGTGTCGCG
dot-bracket secondary structure
.((((((((((.((((((.(((((((((..(((((((((((((((((((..((((((...))))))..))))))))..((......))..))))))))))
)..))))))))).)))))).))))).))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
TGTGACCAAAGTAGTGTGCAGCCAAGGATGACTTGCCGATTTAAAATATCTGATAAGTATTTTATTTCGTATTTTAAAGAAAAAAATCATGATCGGCAAG
TTGTCCTTGGCTATACGTTTCTTTGTGTCGCG
dot-bracket secondary structure
.((((((((((.((((((.(((((((((..(((((((((((((((((((..((((((...))))))..))))))))..((......))..))))))))))
)..))))))))).)))))).))))).))))).
SIMILARITIES| miRBase bna-MIR169b: 2e-18 PMRD bna-miR169a: 2e-58 microPC miR169: 0.00003 | UniProt no hits RFAM MIR169_2: 0.0000000000001 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
