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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040284
species: Brassica napus
miRNA family: MIR169_2
source: miRBase, original name: bna-MIR169m (MI0006469)

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAGCCAAAGATGACTTGCCG

miRNA*
 GCAAGTCGACTTTGGCTCTGT

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TATATGTATCAGAGAGTCATGCATGGGAAAATAGAGAATGATAATGAGCCAAAGATGACTTGCCGATTTTACCAAAGAATTTAAAACTGATAATGGTGAC
TGGCAAGTCGACTTTGGCTCTGTTTCCTTCTCTTCTTTTCGATGTAAGACTCTAGATATCTAT

dot-bracket secondary structure
.(((.(((((..((((((.(((((.(((((..((((((.((....(((((((((.((((((((((...((((((...................)))))).
)))))))))).)))))))))....)).))))))..))))).))))).)))))).))))).)))


SIMILARITIES
miRBase ath-MIR169e: 1e-29

PMRD bna-miR169m: 2e-89

microPC no hits		UniProt no hits

RFAM MIR169_2: 0.000000003

Identical with: bna-miR169m from PMRD (MNEST048362)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"



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