miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST045370
species: Brassica napus
miRNA family: MIR398
source: microPC, original name: miR398

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCT

miRNA*
 GGGTCGATATGAGAACACATG

mismatches: 3
bulges: 1
View larger
pre-miRNA
 AGGGTCGATATGAGAACACATGTGCAATCAACGGCTGTAATGACGCCACATCATTATAACACATCTGTCTTTTCATGTGTTCTCAGGTCACCCCT

dot-bracket secondary structure
.((((.(((.((((((((((((......((...(.((((((((.......)))))))).).....))......)))))))))))).)))))))..


SIMILARITIES
miRBase ath-MIR398b: 0.000000000000001

PMRD ath-miR398b: 0.000000000000001

microPC miR398: 5e-49		UniProt no hits

RFAM MIR398: 9e-48

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;