miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST008656
species: Brassica oleracea
miRNA family: MIR909
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTAGGGTCAAGTTTGCATAG

miRNA*
 GTAAAGATCGACCCAAGGCT

mismatches: 4
bulges: 1
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pre-miRNA
 AACCTGAACTGGTCGGTGTATTTTAGGGTCAAGTTTGCATAGTTACGAGGAATGTGATTGTAAAGATCGACCCAAGGCTGCTTGACCGGCTTCAATC

dot-bracket secondary structure
....(((((((((((..(((.(((.(((((..((((..(((((((((.....)))))))))..)))).))))).))).))).))))))).))))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q944G5|PTR44_ARATH: 0.0000000001

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




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