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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST008664
species: Brassica oleracea
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTG

miRNA*
 GATCATCCTGCGGCTTCATT

mismatches: 1
bulges: 1
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pre-miRNA
 TCTATGTTGGTTTTGAGAGGCTGAAGCTGCCAGCATGATCTGGGCCGGCTGAGGCGCAGGTACAAGGGGGCGTGGACCCAGGGTCCAAATTTTTTTTTTC
ATAATTAGTGTTAAAATGGAGCTTGATTTTCAAAAAAAAAAATTTTAAAAGAGTCCAAAATTTTTAATTTATTTATAGAGTATATGTAAAACTTTTTTTT
TTGAAAAATTATTTTGTCCAAGGGCCTATAATTTACATGAGCTGGCCCTGGATGTATCTCTCAAATTAATATAATCTTAGTGTTAAAAATGTGTTTTCTC
CTCTTTTTCATGGATGCATGCATGTATGTGTGTGTATAAGTGTATAGATAGTGGTACCAGATCATCCTGCGGCTTCATTCACTCAAATCACCAACAA

dot-bracket secondary structure
....(((((((((((((.((.(((((((((.((.(((((((((((((.(((..((((.((...(((((((..((((((...))))))((((((((((((.
..((((((.(((.......)))))))))....)))))))))))).....((((..((..(((((((((..(((...(((.(((((..............(
((((..........((((((.(((((.....((.....))...)))))))))))......)))))...))))).))).)))))))))))).))..)))))
)))))).))....((((((((((....))))))))))..)))).)))....)))).))))))))).))))))))))).)).))))))..))))))).


SIMILARITIES
miRBase aly-MIR167d: 0.000000000001

PMRD ath-miR167d: 0.0000000004

microPC miR167: 0.0000000004		UniProt no hits

RFAM MIR167_1: 0.00000003		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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