miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000325
species: Brassica oleracea var. alboglabra
miRNA family: MIRf129
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea var. alboglabra Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCGGAGGGATGCCTTCCTTG

miRNA*
AGGGTGGACTCCTTCTGAATG

mismatches: 5
bulges: 0

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pre-miRNA
ACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCTAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGC
TGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA


dot-bracket secondary structure
.((....)).(((((((((..(((((.((..((((((((.((...((.((((....))))(((....((.((..((((.....))))...)).))..)))
.))..)).))))))))..)).)))))..))))).))))........



SIMILARITIES
miRBase no hits

PMRD ath-miRf10060-akr: 0.0000000000001

microPC no hits
UniProt sp|P0CH32|UBQ4_ARATH: 2e-20

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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