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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Limnanthes alba
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Tropaeolum majus
,
Carica papaya
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST045924
species:
Brassica rapa
miRNA family:
MIR160
source:
microPC, original name:
miR160
Taxonomy by NCBI:
Brassica rapa
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGTATGCCA
miRNA*
GCGTATGAGGAGCCATGCA
mismatches:
4
bulges:
0
View larger
pre-miRNA
TGCCTGGCTCCCTGTATGCCA
TCCTCTAAGCTCATCGACCATTGATGACCTCCGTGAATG
GCGTATGAGGAGCCATGCA
dot-bracket secondary structure
.((.(((((((..((((((((
(.(.(..((.(((((((...))))))).))..).).)))
))))))..))))))).)).
SIMILARITIES
miRBase
bra-MIR160a
:
1e-39
PMRD
bra-miR160a
:
1e-39
microPC
miR160
:
1e-39
UniProt
no hits
RFAM
mir-160: 7e-17
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record