miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea

ABOUT THIS RECORD

ID: MNEST046565
species: Brassica rapa
miRNA family: MIR156
source: microPC, original name: miR156

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGACAGAAGAGAGTGAGCACA

miRNA*
TGCTCACTGCTCTTTCTGTCA

mismatches: 2
bulges: 2

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pre-miRNA
TGACAGAAGAGAGTGAGCACACAAAAGTAAATTGCATATGTTGCATTTGCTTCTCTTGCGTGCTCACTGCTCTTTCTGTCA

dot-bracket secondary structure
.(((((((((((((((((((.(((((((((((.(((.....)))))))))))...))).))))))))).))).))))))).

UniProt no hits

RFAM mir-156: 2e-23

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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