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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Limnanthes alba
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Tropaeolum majus
,
Carica papaya
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST045682
species:
Carica papaya
miRNA family:
MIR390
source:
microPC, original name:
miR390
Taxonomy by NCBI:
Carica papaya
Carica
Caricaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAGCTCAGGAGGGATAGCGCC
miRNA*
CGCTATCCATCCTGAGTTT
mismatches:
2
bulges:
0
View larger
pre-miRNA
AAGCTCAGGAGGGATAGCGCC
ATGGCGGGTCTTGAATCTTGATCTTCATTTG
CGCTATCCATCCTGAGTTT
dot-bracket secondary structure
((((((((((.(((((((((.
((((.(((((.........)))))))))..)
)))))))).))))))))))
SIMILARITIES
miRBase
gma-MIR390a
:
0.000000003
PMRD
ath-miR390b
:
0.00000005
microPC
miR390
:
7e-35
UniProt
no hits
RFAM
MIR390: 1e-33
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record