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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Limnanthes alba
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Tropaeolum majus
,
Carica papaya
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST002327
species:
Raphanus raphanistrum
miRNA family:
MIR838
source:
miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum
Raphanus
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTTCTTCTTCTTCTTGGATG
miRNA*
TCCAGGAATGGGAGATTATC
mismatches:
4
bulges:
1
View larger
pre-miRNA
AGGTGAAAGACG
TCCAGGAATGGGAGATTATC
GAGATGTGCTCAAGGCTATGCAAGGGAAGGTGGACATAAACACGTACGAGTACAAGAAAATTCCAAAA
CTATAAACCAAGTCAAATCCAGTTAATGTCTAACTCTTTTAAAGAGTGTAATTTCATGTATCAGAG
TTTTCTTCTTCTTCTTGGATG
TCTTTCTGT
dot-bracket secondary structure
....((((((((
((((((((.((((((...((
((.(((((..((...((.((.(((((....(((((((.(((...........................
.....................))).))))))).))))).)).))..))......))))).)).)).
...))))))..))))))))))
))))))...
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record