miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002362
species: Raphanus raphanistrum subsp. landra
miRNA family: MIR838
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum subsp. landra Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTTCTTCTTCTTCTTCCATT

miRNA*
TGTAGTCAGGAGGAGAAAGTG

mismatches: 2
bulges: 2

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pre-miRNA
TTCGATTAGAGATGTAGTCAGGAGGAGAAAGTGGGACTGAAGAATCATATTCACAATCCTCAAGATCTTCATATCCCCAAAACTCTTCTTTATTTTCTTC
TTCTTCTTCCATT
TTCCATTTT


dot-bracket secondary structure
........((((((.((..(((((((((((((((((.((((((.((.................))))))))..))))..............)))))))))
)))).))..))))
)).......



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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