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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002405
species: Raphanus sativus
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACAGAAGAGAGAGAGCACAGT

miRNA*
 TGTAGCTCTCTGGTTTAGTGT

mismatches: 4
bulges: 2
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pre-miRNA
 TGATGTGGATTTGACAGAAGAGAGAGAGCACAGTTTGAGTCGCTGCCAATTCCCTTGTAGCTCTCTGGTTTAGTGTCCATAATATC

dot-bracket secondary structure
...(((((((...((..(((..(((((((((((...((((........))))..)))).)))))))..))).))))))))).....


SIMILARITIES
miRBase far-MIR529: 0.000000004

PMRD ath-miR156q: 1e-18

microPC miR157: 0.00002		UniProt sp|Q700W2|SPL9_ARATH: 0.000003

RFAM mir-156: 0.0003		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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