ABOUT THIS RECORDspecies: Raphanus sativus
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GGTCATGTCTGACAGCCTCACT mismatches: 2 bulges: 1 |
pre-miRNA
AAGGGAACAAGTGAAGCTGCCAGCATGATCTATCTTTGGTTGAGAGATGAATGTGGAAACATATTGTTTAAACCAAAGCTAGGTCATGTCTGACAGCCTC
ACTCCTTCCTG
dot-bracket secondary structure
..(((((..(((((.((((.((((((((((((.((((((((...((((((((((....)))).)))))).)))))))).))))))))).))).)))).))
)))..))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGGGAACAAGTGAAGCTGCCAGCATGATCTATCTTTGGTTGAGAGATGAATGTGGAAACATATTGTTTAAACCAAAGCTAGGTCATGTCTGACAGCCTC
ACTCCTTCCTG
dot-bracket secondary structure
..(((((..(((((.((((.((((((((((((.((((((((...((((((((((....)))).)))))).)))))))).))))))))).))).)))).))
)))..))))).
SIMILARITIES| miRBase ath-MIR167b: 2e-45 PMRD ath-miR167b: 2e-45 microPC miR167: 0.00000009 | UniProt no hits RFAM MIR167_1: 6e-46 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
