miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002419
species: Raphanus sativus var. oleiformis
miRNA family: MIRf351
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTCTGGCTTGGTACTTTTGA

miRNA*
AGAGATACGCAAGCCGAAGAGC

mismatches: 3
bulges: 1

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pre-miRNA
GAAGTGGGTCGCAGAGATACGCAAGCCGAAGAGCAGATCACGTCTCTGGCTTGGTACTTTTGATACAGCCGA

dot-bracket secondary structure
......(((..(((((.(((.(((((((.(((..........))).)))))))))).))))).....)))..


SIMILARITIES
miRBase no hits

PMRD ath-miRf10708-akr: 0.0008

microPC no hits
UniProt sp|Q9M0J3|ERF54_ARATH: 0.000004

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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