miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST046302
species: Raphanus sativus var. oleiformis
miRNA family: MIR167
source: microPC, original name: miR167

Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCACGATCTA

miRNA*
 GATCATGTTTGCAGTTTC

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TGAAGCTGCCAGCACGATCTAATTAACTTTCTTTCTCCGTTTGTTTTCATGACGATGGAAAGAGATGAGTGTAGATTAGATCATGTTTGCAGTTTC

dot-bracket secondary structure
.((((((((.((((.(((((((((.(((((((((.((((((.(((.....))))))))).))))).))))...))))))))).)))).))))))))


SIMILARITIES
miRBase bra-MIR167c: 6e-24

PMRD bra-miR167c: 6e-24

microPC miR167: 1e-49		UniProt no hits

RFAM MIR167_1: 0.0000000000004

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;