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Species belonging to selected taxon:
Theobroma cacao
ABOUT THIS RECORD
ID:
MNEST041080
species:
Theobroma cacao
miRNA family:
MIR156
source:
miRBase, original name:
tcc-MIR156a
(
MI0017453
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGAGAGCACA
miRNA*
TGCTTTCTCTTCTTCTGTCACC
mismatches:
0
bulges:
1
View larger
pre-miRNA
GGGGAAGATCATGACCATGT
TGACAGAAGAGAGAGAGCACA
ACCCGGCATCAGCTAAAGAAAGTCTTTGCTTTTGTTGGGAGTG
TGCTTTCTCTTCTTCT
GTCACC
ATCATCTTTTCACCCCCT
dot-bracket secondary structure
((((..((....((..(((.
(((((((((((((((((((((
.(((((((..(((.((((.....)))))))..)))))))..))
))))))))).))))))
)))).)
))..))...))..)))).
SIMILARITIES
miRBase
vvi-MIR156a
:
2e-27
PMRD
vvi-miR156a
:
2e-27
microPC
miR156
:
0.000000000000007
UniProt
no hits
RFAM
mir-156: 2e-21
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"