miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Lepeophtheirus salmonis
,
Caligus rogercresseyi
,
Caligus clemensi
ABOUT THIS RECORD
ID:
MNEST009429
species:
Caligus rogercresseyi
miRNA family:
miR-4172
source:
miRNEST
Taxonomy by NCBI:
Caligus rogercresseyi
Caligus
Caligidae
Siphonostomatoida
Podoplea
Neocopepoda
Copepoda
Maxillopoda
Crustacea
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGTTATGTCATATCTTTAGGA
miRNA*
CAACCAGATGTATATATAATGTT
mismatches:
4
bulges:
2
View larger
pre-miRNA
AAGTATCAATGGGCTTTTGATC
CAACCAGATGTATATATAATGTT
GAATA
TGTTATGTCATATCTTTAGGA
TCAGTGTAGATGGATACTC
dot-bracket secondary structure
.((((((.....((..((((((
(....((((((..(((((((((.
....)
)))))))).))))))...)))
)))).)).....)))))).
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record