miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis



ABOUT THIS RECORD

ID: MNEST002894
species: Carthamus tinctorius
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATCTTCATCTTCATCCTCA

miRNA*
AGGAGGAGGAGGAGATGATG

mismatches: 2
bulges: 1

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pre-miRNA
TGTTTATGCTCTCGAATTTCAATCTCATCCCCCCTATCACTTTTCGTTTAATCTCTACTGATCAAAACACCTCATCTTCATCTTCATCCTCATCCACATC
CACTGGAGGAGGAGGAGGAGGAGGAGGAGATGATGCTTTTCATAATAGAAGAAGAAGAACCACACCTAGGGCTAATTACGAAGAGGAACAAGCTCGAGTC
CTC


dot-bracket secondary structure
..........(((((.(((...((((.((..(((((......(((.(((....((((...((.((((((..((((((((.(((((.(((((.(((...((
(...)))...))).))))).))))))))))))))).)))).))..))))..)))..))).......)))))........)).))))...))).)))))..
...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





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