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Species belonging to selected taxon:
Carthamus tinctorius
,
Centaurea maculosa
,
Centaurea solstitialis
ABOUT THIS RECORD
ID:
MNEST002944
species:
Centaurea maculosa
miRNA family:
MIR414
source:
miRNEST
Taxonomy by NCBI:
Centaurea maculosa
Centaurea
Centaureinae
Cardueae
Carduoideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATTTCTTCATCATCATCATCT
miRNA*
TGATGATGATGATGATGAGACCA
mismatches:
2
bulges:
2
View larger
pre-miRNA
TCTTCTTCTCC
ATTTCTTCATCATCATCATCT
CTTCATCCCAAAACCATCTTATGACTTCTAAACGACAGCCTCAGGCATTGCCGAAATTCGGCGAATGG
GACGTAAAAAATCCGTCCTCTGCCGATGGATTCACGGTCATATTCGCAAAGGCACGGGATGACAAGAAAACCAACGAAACCGTCACCGTTCCACCTCAAA
AAAGCAACAGCACCAACAAACCCCCTCTTCCACCACAACACCAACAGCAGCAGAATCGGAAATACGAAGAGGAATCAAAGAACTCTAGGTTTTGTTGTTT
TTGATGATGATGATGATTTGAGGATCCATTGTCAACAAATTGATGAACATGTGTGGTTCTTGATCAGAACTTTAAAATGGATGGTGGCTGGTTTGATTTG
AT
TGATGATGATGATGATGAGACCA
AGGTTAGG
dot-bracket secondary structure
(((...(((..
.((((.(((((((((((((((
(.(((..(((..(((((((...((.((((...(((.((((.(((((((((((((...)))))))..((
((((.........)))))).))))..(((((((..((((((..(((....((.((((...(((..................))).)))).))...(((.(
((((((((((.(((.........(((((((..((.......................))......)))))))...............))).)))))))))
))..))))))..))))))...)))))))(((((((....)))))))...))...)))).)))...)))).))......)))))))...)))..)))...)
).
.)))))))))))))).))))...
)))..)))
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|Q8GYN5|RIN4_ARATH: 0.00001
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record