miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis



ABOUT THIS RECORD

ID: MNEST045875
species: Centaurea solstitialis
source: microPC, original name: miR1030

Taxonomy by NCBI:
Centaurea solstitialis Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTGCATTTGCACCTGCACC

miRNA*
TGCAGGACAAGTGCAG

mismatches: 1
bulges: 1

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pre-miRNA
CTGCATTTGCACCTGCACCTTTCTACCTTTCTTCTCCATCTTCATCTTCTTCACCACCATCATAAGACAATGTGTGTGTGTGTGTGTGTGTGTGAGTAGG
TGGAGAGGTTAAGAAGAAAAGAAGGGTGCAGGACAAGTGCAG


dot-bracket secondary structure
(((((((((..(((((((((((((...((((((((((.(((((((((..(((((((((((((((..(((.....))).)))).))).))).))))).)))
))))))))...))))))))))))))))))))).)))))))))



SIMILARITIES
miRBase ptc-MIR530a: 0.0001

PMRD ptc-miRf11026-akr: 0.0001

microPC miR1030: 6e-34
UniProt no hits

RFAM MIR530: 0.0005

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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