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Species belonging to selected taxon:

Beta vulgaris, Mesembryanthemum crystallinum, Tamarix hispida



ABOUT THIS RECORD

ID: MNEST000217
species: Beta vulgaris
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Beta vulgaris Beta Amaranthaceae Caryophyllales core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAACTT

miRNA*
GTTCAAGAAAGTTGTGGGAAA

mismatches: 0
bulges: 0

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pre-miRNA
CTGTCATGCTTTTCCACAGCTTTCTTGAACTTTCCGCTCGTCGTGTTCGTACGTCTCCTCTAACTAATTACATTCATGGTGATCATGTTTATGGTGGAGG
AGATCCACGAGGCGAACCGAATCCATAAAATTCACCATGGAAAGTTCAAGAAAGTTGTGGGAAAATATGGCG


dot-bracket secondary structure
..((((((.(((((((((((((((((((((((((((.(((((....((((..((((((((((........(((.(((((...)))))...))).))))))
))))..)))))))))...((((.......))))....))))))))))))))))))))))))))).)))))).



SIMILARITIES
miRBase vvi-MIR396a: 0.0000000001

PMRD vvi-miR396a: 0.0000000001

microPC miR396: 4e-82
UniProt no hits

RFAM MIR396: 0.000000003
most similar mature miRNAs

Identical with: miR396 from microPC (MNEST044857)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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