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Species belonging to selected taxon:

Ixodes scapularis, Tetranychus urticae, Rhipicephalus microplus, Rhipicephalus appendiculatus



ABOUT THIS RECORD

ID: MNEST034964
species: Ixodes scapularis
miRNA family: mir-10
source: miRBase, original name: isc-mir-10 (MI0012262)

Taxonomy by NCBI:
Ixodes scapularis Ixodes Ixodinae Ixodidae Ixodoidea Ixodida Parasitiformes Acari Arachnida Chelicerata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TACCCTGTAGATCCGAATTTGT

miRNA*
TACAAATTCGGTTCTAGAGAGGCTTTG

mismatches: 3
bulges: 5

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pre-miRNA
CTACATCTACCCTGTAGATCCGAATTTGTCTGCAACAAGACTACAAATTCGGTTCTAGAGAGGCTTTGTGTGG

dot-bracket secondary structure
((((((..(((((.((((.((((((((((((......))))...)))))))).)))).)).)).)..))))))


SIMILARITIES
miRBase api-mir-10: 6e-17

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-10: 2e-29

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




Liczniki na strone;