miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Volvox carteri, Chlamydomonas reinhardtii



ABOUT THIS RECORD

ID: MNEST039306
species: Chlamydomonas reinhardtii
source: miRBase, original name: cre-MIR908 (MI0005701)

Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACGCGTTTGATAGCAGGATC

miRNA*
TCCTGCTATCAAAGGCGTCAAC

mismatches: 1
bulges: 0

View larger
pre-miRNA
GTGGGTTTTGAGAAGATGCGGTCCGTTGGCTATAATGTTGACAGACCACCCGCTCCCTTACTGACGCAGTTGACGCGTTTGATAGCAGGATCATAGTACG
GGACCAGTTCCCCTACCAACTGGTCCCGTAACCACTATGATCCTGCTATCAAAGGCGTCAACTACGTCAATAAGGCAGCGGGTGGTCAATATACATTATT
GCCAACGGACCGGTTCTCCTCAAATGTCAC


dot-bracket secondary structure
((((..((((((.(((..((((((((((((.(((((((.....(((((((((((.(((((.(((((.(((((((((.(((((((((((((((((((((((
(((((((((........))))))))))))....)))))))))))))))))))).))))))))).))))).))))).))))))))))).....))))))).
))))))))))))..))).))))))..))))



SIMILARITIES
miRBase cre-MIR908: 4e-129

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y, Genes Dev. 21:1190-1203(2007)., "A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii"
[2] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"




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