ABOUT THIS RECORDspecies: Caenorhabditis elegans
source: miRBase, original name: cel-mir-4923b (MI0017711)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACGGCGGCAATTTGTTTACAG miRNA* GTAAGCAAATTCCCGTCATTTTC mismatches: 4 bulges: 1 |
pre-miRNA
GTAAGCAAATTCCCGTCATTTTCTGGAAATATTTTGAAACGGCGGCAATTTGTTTACAG
dot-bracket secondary structure
(((((((((((.(((((..((((..((....))..)))).))))).)))))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC, Genome Res. 21:286-300(2011)., "Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans"
GTAAGCAAATTCCCGTCATTTTCTGGAAATATTTTGAAACGGCGGCAATTTGTTTACAG
dot-bracket secondary structure
(((((((((((.(((((..((((..((....))..)))).))))).)))))))))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC, Genome Res. 21:286-300(2011)., "Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans"
