ABOUT THIS RECORDspecies: Pristionchus pacificus
miRNA family: mir-46
source: miRBase, original name: ppc-mir-46 (MI0011147)
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTCATGGAGTCGCTCTCTTC miRNA* AGAGAGCCTTCTGTTGACAGT mismatches: 1 bulges: 4 |
pre-miRNA
ACCCCCGGCACCACGCAGAGACCGAAGAGAGCCTTCTGTTGACAGTGCGGGCCGTTGGTGCTAATGCTATTGTCATGGAGTCGCTCTCTTCAGGCTTGTG
GTCCTCAGGGT
dot-bracket secondary structure
((((..((.(((((...(((.(((((((((((((((...(((((((((.((((....).)))...)).))))))).))))..))))))))).))))))))
))))...))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
ACCCCCGGCACCACGCAGAGACCGAAGAGAGCCTTCTGTTGACAGTGCGGGCCGTTGGTGCTAATGCTATTGTCATGGAGTCGCTCTCTTCAGGCTTGTG
GTCCTCAGGGT
dot-bracket secondary structure
((((..((.(((((...(((.(((((((((((((((...(((((((((.((((....).)))...)).))))))).))))..))))))))).))))))))
))))...))))
SIMILARITIES| miRBase crm-mir-46: 0.000005 PMRD no hits microPC no hits | UniProt no hits RFAM mir-46: 1e-37 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
