ABOUT THIS RECORDspecies: Pristionchus pacificus
miRNA family: mir-2241
source: miRBase, original name: ppc-mir-2241b-2 (MI0011237)
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCGCAAGGTTTCCTCAAGATC miRNA* TCTTCAGGATCCCTGTCTGAACA mismatches: 5 bulges: 1 |
pre-miRNA
GCTCTATTCGATACGCCTCTGATCTTCAGGATCCCTGTCTGAACACAGAAATTGAGTGTTCGCAAGGTTTCCTCAAGATCAGGGCTTCGAGTCAGCT
dot-bracket secondary structure
(((..((((((...(((.((((((((.((((..(((...(((((((.........)))))))..)))..)))).))))))))))).)))))).))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
GCTCTATTCGATACGCCTCTGATCTTCAGGATCCCTGTCTGAACACAGAAATTGAGTGTTCGCAAGGTTTCCTCAAGATCAGGGCTTCGAGTCAGCT
dot-bracket secondary structure
(((..((((((...(((.((((((((.((((..(((...(((((((.........)))))))..)))..)))).))))))))))).)))))).))).
SIMILARITIES| miRBase ppc-mir-2241b-1: 3e-50 PMRD no hits microPC no hits | UniProt no hits RFAM mir-2241: 1e-37 |
Identical with: ppc-mir-2241b-1 from miRBase (MNEST038679) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
