miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST000337
species: Cichorium intybus
miRNA family: MIRf519
source: miRNEST

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GCATAGCATCATGAGCAATCA

miRNA*
ACTGCTAATGATGTTATCTCAT

mismatches: 3
bulges: 1

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pre-miRNA
TATGTAAACCACCAAGAACATGCATAGCATCATGAGCAATCAGCCTTGGAAATATTTTTGAGCAAGTGACTGCTAATGATGTTATCTCATTTCTTGATGG
CTCTTCTT


dot-bracket secondary structure
........(((.((((((.(((.((((((((((.((((.(((..(((((((....)))))))....))).)))).))))))))))..))))))))).)))
........



SIMILARITIES
miRBase no hits

PMRD ath-miRf11142-akr: 0.000000001

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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