miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST001320
species: Lactuca sativa
miRNA family: MIRf168
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGTAGCCAAGGATGACTTG

miRNA*
GTCTTCTTGGCTAACTTGAC

mismatches: 2
bulges: 2

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pre-miRNA
AAATGAAGAGGGACCTTACATGAAGGGAACAATGTGTTTGGTAGCCAAGGATGACTTGCCTGTTGCTTTCTCTCAAAGGATTTATTTATATCAAGACCTT
TGTTAGACCGGTTATCAGGCAGTCTTCTTGGCTAACTTGACAATTTCTTCCCTTTCATGTTAGATCTCATTTTCT


dot-bracket secondary structure
....(((((((((.((.((((((((((((.((..((((.((((((((((((.((((.(((((..(((.(((..((((((.(((.........))).))))
))..)))..)))...)))))))))))))))))).))).))))..)).))))).))))))).)).)))).))))).



SIMILARITIES
miRBase ptc-MIR169k: 0.000000002

PMRD ptc-miR169k: 0.000000002

microPC miR169: 4e-48
UniProt no hits

RFAM MIR169_5: 0.00000004
most similar mature miRNAs

Identical with: miR169 from microPC (MNEST045794)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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