miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST002692
species: Taraxacum kok-saghyz
miRNA family: MIR393
source: miRNEST

Taxonomy by NCBI:
Taraxacum kok-saghyz Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCAAAGGGATCGCATTGATC

miRNA*
TCATGTGATGTCTTTGGAAG

mismatches: 1
bulges: 1

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pre-miRNA
CACTAGATTTGATTATGTTGCAGCAGGCGGAAGCTTCCAAAGGGATCGCATTGATCCGGTTTATTAGATGATGTGATTCATTCGTATTTGTTTCAGGATT
ATCCATCCATGGAAGCAACTCGATCTGAGATGATAATTAATAATTTGGATCATGTGATGTCTTTGGAAGTTTCCGTCAGTGTTTGCATTGATCTATCCAT
C


dot-bracket secondary structure
.....(((..(((((...((((((.((((((((((((((((((.(((((((.(((((((.(((((((.((...((.((((.(((...(((((((.((((.
....))))...)))))))..)))..)))).)).)).))))))).)))))))))))))).)))))))))))))))))).))...)))).))))).)))...
.



SIMILARITIES
miRBase sbi-MIR393: 0.0000002

PMRD sbi-miR393: 0.0000002

microPC miR393: 0.000000003
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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