miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST000347
species: Cichorium intybus
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAACATGATCTT

miRNA*
GTCATCCTTGCAGCTTCAAT

mismatches: 4
bulges: 1

View larger
pre-miRNA
CTTTATGCTGATTTGAGAGATTGAAGCTGCCAACATGATCTTGGTGATGCCAAACTGGGTCGCCTGTGTCTGATTGTCCATATATGAGTGGACAATGTCA
AGGCTCTATACATAGGCAAATGGCCGGGCGTGTGTTTTTGGTGATGTGTTCGTATCTGTTCATGGGTTGAGAAAGGAGAGGTTAACCAGGTCATCCTTGC
AGCTTCAAT
CACTCATGCCCAACAATT


dot-bracket secondary structure
......((.....((((.((((((((((((....((((.((((((..(((((((......((((((.(((...(((((.((.(((((((.(((...))).
..)))).))).)).)))))..)))))))))......))))))).((...((...(((.((((.....))))...)))..)).))))))))))))....))
)))))))))
).)))).)).........



SIMILARITIES
miRBase csi-MIR167c: 0.0000002

PMRD vvi-miR167a: 0.00005

microPC miR167: 3e-55
UniProt no hits

RFAM MIR167_1: 0.000003
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





Liczniki na strone;