miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ciona intestinalis, Ciona savignyi



ABOUT THIS RECORD

ID: MNEST005578
species: Ciona intestinalis
miRNA family: miR-4179
source: miRNEST

Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CACTTCATCTGGTATAAACTT

miRNA*
GCTTTTACACCAGATAAGTCGAA

mismatches: 3
bulges: 2

View larger
pre-miRNA
TTACAACGCATTATAAAATCTAATAGATTTTCACTTCATCTGGTATAAACTTTAATTTACATTTATTTCAGTGATATCACATACGTAGTGTTGTGGTGTC
AAACCTTGATGTATCTTGCTAAATGTCCGACACAACATTGGAATAAAATTAATGCTTTTACACCAGATAAGTCGAAAAAGATTATTTTATATTTTGCCTG
TTAG


dot-bracket secondary structure
..(((..(((.(((((((..((((...(((((((((.(((((((.((((..(((((((.....((((((((((.(((.((((.....)))).)))(((((
..((.((...((.....))..)).))..)))))..)))))))))))))))))....)))).))))))))))).)))))..)))))))))))...))).))
)...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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