miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ciona intestinalis, Ciona savignyi



ABOUT THIS RECORD

ID: MNEST005587
species: Ciona intestinalis
miRNA family: mir-580
source: miRNEST

Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGCGAATGATGAATCATCAT

miRNA*
GATGAGTCATCAACGCTAGGC

mismatches: 4
bulges: 2

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pre-miRNA
GTTGTTTTTGCTTGCGAATGATGAATCATCATATTTTCGATGAGTCATCAACGCTAGGCATTGTATG

dot-bracket secondary structure
........((((((((..((((((.(((((........))))).)))))).))).))))).......


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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