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Species belonging to selected taxon:

Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Citrus clementina



ABOUT THIS RECORD

ID: MNEST000378
species: Citrus reticulata
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGTGCCAATATC

miRNA*
TATTGGTGCGGTTCAATAAGA

mismatches: 1
bulges: 0

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pre-miRNA
ATGGGTACAACGGGATATTGGTGCGGTTCAATAAGAAAACGGTGCTCAATACTTTTTGAGCTCCGCTTTTTGATTGAGCCGTGCCAATATCACGTGCCAC
TCG


dot-bracket secondary structure
..((((...(((.(((((((((((((((((((.(((((.(((.((((((......)))))).))).))))).))))))))))))))))))).)))...))
)).



SIMILARITIES
miRBase crt-MIR171: 9e-54

PMRD vvi-miR171c: 4e-22

microPC miR171: 5e-40
UniProt no hits

RFAM MIR171_1: 1e-22
most similar mature miRNAs

Identical with: miR171 from microPC (MNEST046797)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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Liczniki na strone;