miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Citrus clementina
ABOUT THIS RECORD
ID:
MNEST045465
species:
Citrus sinensis
source:
microPC, original name:
miR164
Taxonomy by NCBI:
Citrus sinensis
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGAGAAGCAGGGCACGTG
miRNA*
TGTGCCCTTCTTCCCCA
mismatches:
3
bulges:
0
View larger
pre-miRNA
TGGAGAAGCAGGGCACGTG
CATTACTAACTCAACCGCACATACATCTACTAACAAAAATTAATTAATCCACACATTTTGAAGAAACCAAATCAAGAAGCA
GCAAGCTCTTTCTGTTGTTATAGCTCAGTCATGAGTTGAGTTATTTCTTCA
TGTGCCCTTCTTCCCCA
dot-bracket secondary structure
.((.((((.((((((((((
......(((((((((...........(((.((((((....................((((.......))))...(((((.(
(....)).))))).)))))))))...........)))))))))......))
)))))))).)))).)).
SIMILARITIES
miRBase
csi-MIR164
:
2e-92
PMRD
csi-miR164
:
2e-92
microPC
miR164
:
2e-92
UniProt
no hits
RFAM
MIR164: 0.0000000007
Identical with:
csi-MIR164
from miRBase (
MNEST041221
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record