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Species belonging to selected taxon:

Danio rerio, Oryzias latipes, Salmo salar, Ictalurus punctatus, Oncorhynchus mykiss, Gasterosteus aculeatus, Pimephales promelas, Gadus morhua, Ictalurus furcatus, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Osmerus mordax, Anoplopoma fimbria, Cyprinus carpio, Esox lucius, Takifugu rubripes, Sebastes caurinus, Misgurnus anguillicaudatus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Rutilus rutilus, Poecilia reticulata, Oncorhynchus tshawytscha, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Oncorhynchus nerka, Sebastes rastrelliger, Thymallus thymallus, Solea senegalensis, Coregonus clupeaformis, Thunnus thynnus, Cynoglossus semilaevis, Salvelinus fontinalis



ABOUT THIS RECORD

ID: MNEST034660
species: Oryzias latipes
miRNA family: miR-430a
source: miRBase, original name: ola-mir-430a-4 (MI0013018)

Taxonomy by NCBI:
Oryzias latipes Oryzias Oryziinae Adrianichthyidae Adrianichthyoidei Beloniformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAAGTGCTACTTGTTGGGGTA

miRNA*
CCTTGACACAGGCACTGACT

mismatches: 6
bulges: 1

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pre-miRNA
GGACATCAAGATGACCTTGACACAGGCACTGACTCTTTCTTCTTTGTAGTAAGTGCTACTTGTTGGGGTAATTTTGGTGTCC

dot-bracket secondary structure
((((((((((((.((((..(((..((((((.((((..........).))).))))))...)))..)))).))))))))))))


SIMILARITIES
miRBase ola-mir-430a-2: 2e-41

PMRD no hits

microPC no hits
UniProt no hits

RFAM miR-430: 4e-34

Identical with: ola-mir-430a-3 from miRBase (MNEST034659)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: in-situ, Northern

references

[1] Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K, Gene. 449:41-49(2010)., "Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development"




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