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Species belonging to selected taxon:

Dendroctonus ponderosae, Diabrotica virgifera virgifera, Tribolium castaneum



ABOUT THIS RECORD

ID: MNEST037692
species: Tribolium castaneum
miRNA family: mir-2
source: miRBase, original name: tca-mir-2c (MI0008893)

Taxonomy by NCBI:
Tribolium castaneum Tribolium Tenebrionidae Tenebrionoidea Cucujiformia Polyphaga Coleoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATCACAGCCAGCTTTGATGAGC

miRNA*
TTATCAGAGTTGGCGGTTTTAGA

mismatches: 4
bulges: 0

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pre-miRNA
AGTCTTGTCTGTCCTTATCAGAGTTGGCGGTTTTAGATTAACTGATTCTATCACAGCCAGCTTTGATGAGCACAGTTGAGATT

dot-bracket secondary structure
(((((((.((((.(((((((((((((((.((..((((.........))))..)).))))))))))))))).)))).)))))))


SIMILARITIES
miRBase tca-mir-2c: 6e-42

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-2: 6e-30

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID

references

[1] Singh J, Nagaraju J, Insect Mol Biol. 17:427-436(2008)., "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)"
[2] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"




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