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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST001932
species: Picea engelmannii x Picea glauca
miRNA family: MIRf240
source: miRNEST

Taxonomy by NCBI:
Picea engelmannii x Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGTTCAAGAAAGCCGTGGAAA

miRNA*
TCCCACGGCTTTCTTGAGCTTC

mismatches: 1
bulges: 1

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pre-miRNA
CTTTAATATTCTTCCCACGGCTTTCTTGAGCTTCGTATGCGGATCTGTTAGCGGTGCGATCTGTCGCCAACACTCCCGATCGGGAAGTTCAAGAAAGCCG
TGGAAA
AATATGAGA


dot-bracket secondary structure
.....(((((.((((.((((((((((((((((((.....(((...((((.((((.........)))).))))...))).....)))))))))))))))))
))))).
)))))....



SIMILARITIES
miRBase pab-MIR396c: 7e-61

PMRD ptc-miRf10517-akr: 0.000006

microPC miR396: 9e-48
UniProt no hits

RFAM MIR396: 0.000002
most similar mature miRNAs

Identical with: pab-MIR396c from miRBase (MNEST039381)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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