miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST001936
species: Picea glauca
miRNA family: miR950-5p
source: miRNEST

Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAACATCTGGGCCACGATGGT

miRNA*
CATGGTGCCCCAGATGATAAG

mismatches: 3
bulges: 0

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pre-miRNA
GGTGTAGGGAAAGAGGTTTGGAAGGTGATCTTAACATCTGGGCCACGATGGTTTATTGTTCATCGTGTATTTATCATAAACCATGGTGCCCCAGATGATA
AG
AGCACCTTCGCCTTCGTGCCTTGTTCCA


dot-bracket secondary structure
.......((((.(((((.(((((((((.(((((.((((((((.(((.(((((((((.((.((...)).....)).))))))))).))).)))))))).))
))
).))))))).....)).))))).)))).



SIMILARITIES
miRBase pab-MIR950: 2e-39

PMRD pta-miR950b: 0.0000000004

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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