miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST039380
species: Picea abies
miRNA family: MIR396
source: miRBase, original name: pab-MIR396b (MI0016123)

Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCCACGGCTTTCTTGAACTT

miRNA*
GATCAAGAAAGCCGTGGGAAA

mismatches: 1
bulges: 0

View larger
pre-miRNA
TCATAGTTTTCCACGGCTTTCTTGAACTTACTTCACGATCAGGTCTGTTGGCGGCCGATCGCATCGATAACAGATCCGGGTGACAAGATCAAGAAAGCCG
TGGGAAA
TTATAGAGG


dot-bracket secondary structure
(((((((((((((((((((((((((.(((...((((..((.(((((((((((((....)))).....))))))))).)))))).))).))))))))))))
)))))))
)))).))..



SIMILARITIES
miRBase pab-MIR396c: 0.000000001

PMRD ptc-miRf10517-akr: 0.000006

microPC miR396: 4e-50
UniProt no hits

RFAM MIR396: 0.0001

Identical with: miR396 from microPC (MNEST045080)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"




Liczniki na strone;