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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST039387
species: Picea abies
miRNA family: MIR535
source: miRBase, original name: pab-MIR535 (MI0016129)

Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAACGAGAGAGAGCACGC

miRNA*
GTGCTCTCTGCTTGTAGTCAGC

mismatches: 1
bulges: 1

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pre-miRNA
AAATATCCGTTCTATTCCATTGCTGACAACGAGAGAGAGCACGCCTGTATTCTCTTATATGAATTTTGCATATGTGGGCGTCCATGCGTGCTCTCTGCTT
GTAGTCAGC
AAAGCGACTGCATCTCAACT


dot-bracket secondary structure
.......((((........((((((((.((((((((((((((((.((.((.(((.((((((.......)))))).))).)).)).))))))))))).)))
)).))))))
))))))..............



SIMILARITIES
miRBase osa-MIR535: 0.00002

PMRD vvi-miR535c: 0.00002

microPC miR535: 2e-42
UniProt no hits

RFAM MIR535: 0.0005

Identical with: miR535 from microPC (MNEST046789)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"




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