miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002028
species: Pinus contorta
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Pinus contorta Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCAAGAAAACTGTGGGAAAG

miRNA*
TTTCCACAGCTTTCTTGAACT

mismatches: 1
bulges: 0

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pre-miRNA
TCATGACGAATCTTGTCATACTTTTCCACAGCTTTCTTGAACTTTACGTGTACGGGACGAGGAGATTCTGATTTCTACGTCTGCGATTAAAGTTCAAGAA
AACTGTGGGAAAG
CATGGTAGGATTCTGCAAT


dot-bracket secondary structure
...((..((((((((((((.(((((((((((.((((((((((((((..(((...(((((.((((((....)))))).))))))))..)))))))))))))
).)))))))))))
.))))))))))))..))..



SIMILARITIES
miRBase pta-MIR396: 3e-63

PMRD pta-miR396: 3e-63

microPC miR396: 4e-44
UniProt no hits

RFAM MIR396: 5e-53
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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