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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST051584
species: Pinus taeda
source: PMRD, original name: pta-miR1310

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGCATCGGGGGCGTAACGCCCCT

miRNA*
GGTGCGGCTGCTCCATTGAGCCGC

mismatches: 3
bulges: 5

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pre-miRNA
AGGCATCGGGGGCGTAACGCCCCTCGACCTATTCTCAAACTTTAAATAGGTAAGAGGGTGCGGCTGCTCCATTGAGCCGC

dot-bracket secondary structure
.(((.((.((((((...((((((((.(((((((...........)))))))..))))).)))..))))))...)))))..


SIMILARITIES
miRBase pta-MIR1310: 4e-40

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: pta-MIR1310 from miRBase (MNEST039445)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ, Genome Res. 18:571-584(2008)., "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"




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