miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002002
species: Picea sitchensis
miRNA family: MIR482
source: miRNEST

Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTCCCTATTCCTCCCATT

miRNA*
TGGGAGGATAGGAGAAGGCT

mismatches: 1
bulges: 2

View larger
pre-miRNA
GCACGAGGTTGAGGATTGGGAGGATAGGAGAAGGCTGTTTGCTTAATTCTCAGTTGAAACCTGATTAGTCTTCCCTATTCCTCCCATTCCTATTGCCTCC
ATCACACA


dot-bracket secondary structure
....(((((..((((.((((((((((((.((((((((.(((.(((((.....)))))....))).)))))))))))).)))))))).))))...))))).
........



SIMILARITIES
miRBase pab-MIR482b: 6e-52

PMRD pta-miR482c: 0.0000003

microPC miR482: 0.0003
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;