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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST039424
species: Pinus taeda
miRNA family: MIR319
source: miRBase, original name: pta-MIR319 (MI0005786)

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGACTGAAGGGAGCTCC

miRNA*
AGCTCCCTTCAATCCAAGA

mismatches: 1
bulges: 0

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pre-miRNA
GATAAGTGGAGCTCCCTTCAATCCAAGAAATGCGTGTTTAGTGACAGTACATCTCCTGCGTCATGCACACCACTATCCTGTCATGCAGGTCGATTGATTG
ATTTGTTCAGGCTGCTGGAGAGTCACGGACAGGGAAGTAGAATGCATGAATCAGCAGCTGAACCACCGCTGCACAAGCTTTGGTTGGACTGAAGGGAGCT
CC
AACA


dot-bracket secondary structure
......((((((((((((((.(((((..((.((.(((.(((((...((...((..((((.(((((((..(.(((.(((((((..(((((((((....)))
))))))...((((.......))))...))))))).))).)..)))))))....))))..))))...))))).))).)).))..))))).)))))))))))
))
)...



SIMILARITIES
miRBase pta-MIR159a: 7e-115

PMRD pta-miR319: 7e-115

microPC miR319: 2e-108
UniProt no hits

RFAM MIR159: 0.00001

Identical with: pta-miR159a from PMRD (MNEST051553)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"




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