miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Litopenaeus vannamei, Lepeophtheirus salmonis, Daphnia pulex, Petrolisthes cinctipes, Penaeus monodon, Artemia franciscana, Caligus rogercresseyi, Homarus americanus, Eriocheir sinensis, Carcinus maenas, Lernaeocera branchialis, Caligus clemensi, Daphnia magna, Gammarus pulex, Calanus finmarchicus, Callinectes sapidus, Fenneropenaeus chinensis



ABOUT THIS RECORD

ID: MNEST035007
species: Daphnia pulex
miRNA family: mir-9
source: miRBase, original name: dpu-mir-79 (MI0012249)

Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATAAAGCTAGGTTACCAAAGTTA

miRNA*
TCTTTGGTTATCTAGCTGTATGA

mismatches: 4
bulges: 0

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pre-miRNA
GGTCGTCATGGCGCTGCTTTTTTCTTTGGTTATCTAGCTGTATGAGTGTTAGAAGACGTCATAAAGCTAGGTTACCAAAGTTAAGAACTGCCCCTCTTCA
T


dot-bracket secondary structure
.........((.((.(.((((..(((((((.((((((((.(((((.((((....))))))))).)))))))).)))))))..)))).).)).))......
.



SIMILARITIES
miRBase dpu-mir-9: 2e-51

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-9: 0.0000000000004

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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