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Species belonging to selected taxon:

Cryptomeria japonica



ABOUT THIS RECORD

ID: MNEST045706
species: Cryptomeria japonica
miRNA family: MIR398
source: microPC, original name: miR398

Taxonomy by NCBI:
Cryptomeria japonica Cryptomeria Cupressaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTGTTCTCAGGTCACCCCT

miRNA*
GGATGAACTTGAGAACACACG

mismatches: 1
bulges: 1

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pre-miRNA
AGGGATGAACTTGAGAACACACGGCCATCATATAGCATGATTGCACACAGAAATTGTGTGTGCATAATGTGTTATTTGATTAGGCATGTGTTCTCAGGTC
ACCCCT


dot-bracket secondary structure
((((.(((.((((((((((((..(((((((.((((((((..((((((((.......))))))))...)))))))).))))..))).))))))))))))))
).))))



SIMILARITIES
miRBase ath-MIR398c: 0.00002

PMRD ath-miR398c: 0.00002

microPC miR398: 2e-55
UniProt no hits

RFAM MIR398: 0.0004

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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