miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Dendroctonus ponderosae, Diabrotica virgifera virgifera, Tribolium castaneum



ABOUT THIS RECORD

ID: MNEST037684
species: Tribolium castaneum
miRNA family: let-7
source: miRBase, original name: tca-let-7 (MI0008896)

Taxonomy by NCBI:
Tribolium castaneum Tribolium Tenebrionidae Tenebrionoidea Cucujiformia Polyphaga Coleoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTGTACAGCCTGCTAACTTTCCC

miRNA*
TTGAGGTAGTAGGTTGTATAGTA

mismatches: 4
bulges: 0

View larger
pre-miRNA
GTCTGTTTGAGGTAGTAGGTTGTATAGTAAGTATTACACCTATTGGGAGTGCTGTACAGCCTGCTAACTTTCCCAGAC

dot-bracket secondary structure
(((((...(((.(((((((((((((((((.........((....))...))))))))))))))))).)))...)))))


SIMILARITIES
miRBase tca-let-7: 5e-39

PMRD no hits

microPC no hits
UniProt no hits

RFAM let-7: 1e-36

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID

references

[1] Singh J, Nagaraju J, Insect Mol Biol. 17:427-436(2008)., "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)"
[2] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"




Liczniki na strone;